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Daily signals and weekly digests, formatted for fast scanning.
Protein Design Digest - 2026-02-06 - DeepFold-PLM: accelerating protein structure prediction via efficient homology search using protein language models.
Protein Design Digest - 2026-02-05 - A New Insight into the Study of Neural Cell Adhesion Molecule (NCAM) Polysialylation Inhibition Incorporated the Molecular Docking Models into the NMR Spectroscopy of a Crucial Peptide-Ligand Interaction.
Protein Design Digest - 2026-02-04 - Decrypting potential mechanisms linking ochratoxin A to hepatocellular carcinoma: an integrated approach combining toxicology, machine learning, molecular docking, and molecular dynamics simulation.
Protein Design Digest - 2026-02-03 - Comparison of In Vitro Multiple Physiological Activities of Cys-Tyr-Gly-Ser-Arg (CYGSR) Linear and Cyclic Peptides and Analysis Based on Molecular Docking.
Protein Design Digest - 2026-02-02 - Evaluating zero-shot prediction of monomeric protein design success by AlphaFold, ESMFold, and ProteinMPNN.
Protein Design Digest - 2026-01-31 - Efficacy of Ipflufenoquin against Strawberry Gray Mold: Insights from AlphaFold- Based Structural Modeling and Genome-Wide Transcriptomic Analysis.
A curated summary of the top protein engineering and structure prediction signals from Jan 26 - Jan 30, 2026.
Protein Design Digest - 2026-01-30 - Scalable embedding fusion with protein language models: insights from benchmarking text-integrated representations.
Protein Design Digest - 2026-01-29 - PepScorer::RMSD: An Improved Machine Learning Scoring Function for Protein-Peptide Docking.
Protein Design Digest - 2026-01-28 - Tailored pyrrole-based imidazothiazole scaffolds: Synthetic elaboration, enzyme kinetic profiling and DFT-guided molecular docking toward Antidiabetic therapeutics.
Protein Design Digest - 2026-01-27 - ModelCIF update: Supporting Emerging Classes of Computational Macromolecular Models.
Protein Design Digest - 2026-01-26 - Energy-Driven Innovations in Computational De Novo Protein Engineering.
Protein Design Digest - 2026-01-25 - Comprehensive Molecular Docking and Molecular Dynamics Reveal Inhibitors of HER2 L755S, T798I, and T798M based on a Large Database of Curcumin Derivatives.
Protein Design Digest - 2026-01-24 - DynaBench: Dynamic data for the docking benchmark.
A curated summary of the top protein engineering and structure prediction signals from Jan 19 - Jan 23, 2026.
Protein Design Digest - 2026-01-23 - Mechanistic Investigation of Astragalus Root in the Management of T2DM-NAFLD Comorbidity: An Integrated Network Pharmacology, Molecular Docking, Molecular Dynamics Simulation, and In Vitro Study
Protein Design Digest - 2026-01-22 - Predicting the Mechanism of Action of Bawei Chufan Soup in Treating Teen Depression through Network Pharmacology, Molecular Docking and Molecular Dynamics Simulation.
Protein Design Digest - 2026-01-21 - Mechanistic Investigation of Astragalus Root in the Management of T2DM-NAFLD Comorbidity: An Integrated Network Pharmacology, Molecular Docking, Molecular Dynamics Simulation, and In Vitro Study
Protein Design Digest - 2026-01-20 - MetalloDock: Decoding Metalloprotein-Ligand Interactions via Physics-Aware Deep Learning for Metalloprotein Drug Discovery.
Protein Design Digest - 2026-01-19 - Enhancing CYP450-Ligand Binding Predictions: A Comparative Analysis of Ligand-Based and Hybrid Machine Learning Models.
A curated summary of the top protein engineering and structure prediction signals from Jan 12 - Jan 16, 2026.
Protein Design Digest - 2026-01-16 - In Silico Discovery of RIOK3 Inhibitors Against Pancreatic Ductal Adenocarcinoma Using Homology Modelling, Molecular Docking, Molecular Dynamics Simulations, ADMET Prediction, and MTT assay
Protein Design Digest - 2026-01-15 - Benchmarking co-folding methods to predict the structures of covalent protein-ligand complexes.
Protein Design Digest - 2026-01-14 - Advantages and Limitations of AlphaFold in Structural Biology: Insights from Recent Studies.
Protein Design Digest - 2026-01-13 - Geometric deep learning assists protein engineering. Opportunities and Challenges.
Protein Design Digest - 2026-01-12 - Synthesis, Anticancer Evaluation, and Molecular Docking of Triazolylmethyl-Dihydroquinazolinyl Benzoate Derivatives as Potential PARP-1 Inhibitors.
Protein Design Digest - 2026-01-11 - Integrative Network Pharmacology and Molecular Docking-Based Validation of Berberine as a Therapeutic Agent in Arsenic-Induced Cardiotoxicity.
Protein Design Digest - 2026-01-10 - Integrated QSAR, molecular docking, and dynamics-based discovery of a potent selective HDAC1 inhibitor with therapeutic potential in aggressive cancers.
A curated summary of the top protein engineering and structure prediction signals from Jan 05 - Jan 09, 2026.
Protein Design Digest - 2026-01-09 - Discovery of PPARγ Partial Agonists for Treatment of Type 2 Diabetes Based on an Integrated Virtual Screening Strategy that Combines Fragment Molecular Orbital Calculations, Machine Learning, Molecular Docking, Interaction Fingerprint Filtering, and Molecular Dynamics Simulations.
Protein Design Digest - 2026-01-08 - Discovery of PPARγ Partial Agonists for Treatment of Type 2 Diabetes Based on an Integrated Virtual Screening Strategy that Combines Fragment Molecular Orbital Calculations, Machine Learning, Molecular Docking, Interaction Fingerprint Filtering, and Molecular Dynamics Simulations.
Protein Design Digest - 2026-01-07 - Discovery of PPARγ Partial Agonists for Treatment of Type 2 Diabetes Based on an Integrated Virtual Screening Strategy that Combines Fragment Molecular Orbital Calculations, Machine Learning, Molecular Docking, Interaction Fingerprint Filtering, and Molecular Dynamics Simulations.
Protein Design Digest - 2026-01-07 - Discovery of PPARγ Partial Agonists for Treatment of Type 2 Diabetes Based on an Integrated Virtual Screening Strategy that Combines Fragment Molecular Orbital Calculations, Machine Learning, Molecular Docking, Interaction Fingerprint Filtering, and Molecular Dynamics Simulations.
Protein Design Digest - 2026-01-06 - AlphaFold for Docking Screens.
Protein Design Digest - 2026-01-05 - AlphaFold for Docking Screens.
Protein Design Digest - 2026-01-05 - AlphaFold for Docking Screens.
Protein Design Digest - 2026-01-05 - AlphaFold for Docking Screens.
A curated summary of the top protein engineering and structure prediction signals from Dec 28 - Jan 04, 2026.
Protein Design Digest - 2026-01-04 - AlphaFold for Docking Screens.
Protein Design Digest - 2026-01-04 - AlphaFold for Docking Screens.
Protein Design Digest - 2026-01-03 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2026-01-03 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2026-01-03 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2026-01-02 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2026-01-01 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2026-01-01 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-31 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-31 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-30 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-30 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-29 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-29 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
A curated summary of the top protein engineering and structure prediction signals from Dec 21 - Dec 28, 2025.
Protein Design Digest - 2025-12-28 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-27 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-27 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-26 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-25 - Integrated cytotoxicity screening and in silico analysis of coumarin nucleoside conjugates as computationally modeled VEGFR-2 inhibitors: oncocyte cytotoxicity, molecular docking, and dynamics simulation studies.
Protein Design Digest - 2025-12-24 - Cytotoxicity, apoptosis, molecular docking, and molecular dynamics study of novel compounds of Sulfamide derivatives coupled with DHP scaffolds as potent inhibitors of the MCF-7, A549, SKOV-3, and EA. yh926 carcinoma cells.
Protein Design Digest - 2025-12-24 - Cytotoxicity, apoptosis, molecular docking, and molecular dynamics study of novel compounds of Sulfamide derivatives coupled with DHP scaffolds as potent inhibitors of the MCF-7, A549, SKOV-3, and EA. yh926 carcinoma cells.
Protein Design Digest - 2025-12-23 - A Comparative Study of Deep Learning and Classical Modeling Approaches for Protein-Ligand Binding Pose and Affinity Prediction in Coronavirus Main Proteases.
Protein Design Digest - 2025-12-23 - Cytotoxicity, apoptosis, molecular docking, and molecular dynamics study of novel compounds of Sulfamide derivatives coupled with DHP scaffolds as potent inhibitors of the MCF-7, A549, SKOV-3, and EA. yh926 carcinoma cells.
Protein Design Digest - 2025-12-22 - Cytotoxicity, apoptosis, molecular docking, and molecular dynamics study of novel compounds of Sulfamide derivatives coupled with DHP scaffolds as potent inhibitors of the MCF-7, A549, SKOV-3, and EA. yh926 carcinoma cells.
Protein Design Digest - 2025-12-22 - Cytotoxicity, apoptosis, molecular docking, and molecular dynamics study of novel compounds of Sulfamide derivatives coupled with DHP scaffolds as potent inhibitors of the MCF-7, A549, SKOV-3, and EA. yh926 carcinoma cells.
A curated summary of the top protein engineering and structure prediction signals from Dec 14 - Dec 21, 2025.
Protein Design Digest - 2025-12-21 - Meeko: Molecule Parametrization and Software Interoperability for Docking and Beyond.